Hello,
I fixed upload directory issue using Replace URLs. You can do it for any other address, too (see Replace URLs tab). Note the redirect will be saved in your browser so I changed new upload path to ‘storage’ to test it.
You can also fix this kind of issue by adding following rule to Apache config:
DirectorySlash Off
Regarding /theme issue, it is because your theme folder has dot in its name! Rename your theme folder (wp-content/themes/lapax1.2.2d) to something without dot then go to HMWP settings page and try again 🙂